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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_76180828_76181429_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76180828 - 76181429
Intron Length:
602

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATAT
5'SS Class:
strong_major
3'SS Sequence:
TACTCATTGTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
CCTTCTTTACTC
Flanking Amino Acid:
PISKILYKGKHLHIPTMENG
Intron Amino Acid Position:
334

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
86.8
22.9
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
66.8
0.38
1
66.4
39.4
Minor 5ss
39.6
-1.2
3.1
55.7
48.5
Minor BPS
59.5
0.28
1.6
65.01
41.9

Associated Gene:

Gene:
BCAT1
Ensembl Gene ID:
ENSAPLG00000003259
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028439
76175388 - 76234249
58862
ENSAPLT00000028394
76174504 - 76234249
59746
ENSAPLT00000003340
76175388 - 76205282
29895