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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_76183593_76189100_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
76183593 - 76189100
Intron Length:
5508

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATAGTGA
5'SS Class:
major
3'SS Sequence:
TTGTATTTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTGTTTAATT
Flanking Amino Acid:
LFLYWINEDGENELATPPLD
Intron Amino Acid Position:
258

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1
61.7
39.4
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
75.9
0.58
1
72.4
42.2
Minor 5ss
41.5
-0.9
3.2
55.7
48.5
Minor BPS
74.8
0.86
1.7
91.31
32.6

Associated Gene:

Gene:
BCAT1
Ensembl Gene ID:
ENSAPLG00000003259
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028439
76175388 - 76234249
58862
ENSAPLT00000028394
76174504 - 76234249
59746
ENSAPLT00000003340
76175388 - 76205282
29895