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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_76194089_76194950_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76194089 - 76194950
Intron Length:
862

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTACGTAGC
5'SS Class:
major
3'SS Sequence:
TTTTCCTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCCT
U12 Branch Point Sequence:
TTTTCCTTCCCA
Flanking Amino Acid:
ARSARRTTLPSFDQNELLEC
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.6
0.39
1.1
61.4
43.6
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
87.7
0.85
0.7
80.8
31.1
Minor 5ss
37.2
-1.4
3
50.7
40
Minor BPS
48.9
-0
3.6
83.03
38.2

Associated Gene:

Gene:
BCAT1
Ensembl Gene ID:
ENSAPLG00000003259
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028394
76174504 - 76234249
59746
ENSAPLT00000003340
76175388 - 76205282
29895
ENSAPLT00000028439
76175388 - 76234249
58862