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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_76245411_76246796_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76245411 - 76246796
Intron Length:
1386

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTTCCGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAC
U12 Branch Point Sequence:
ACTTTTCTACTT
Flanking Amino Acid:
SLLNLPGISSLVDKVGESNN
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
91.2
27.5
Major BPS
63.9
0.35
1.3
64.5
42.5
Major PPT
83.6
0.76
0.7
79.9
25.5
Minor 5ss
42.1
-0.9
2.9
61.3
43
Minor BPS
47.4
-0.1
1.9
65.66
40

Associated Gene:

Gene:
GOLT1B
Ensembl Gene ID:
ENSAPLG00000003388
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003458
76245372 - 76255652
10281