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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_76246879_76249940_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
76246879 - 76249940
Intron Length:
3062

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACTT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTACCCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
GATATTTTACCC
Flanking Amino Acid:
LEIYGFFLLFRGFFPVVVGF
Intron Amino Acid Position:
99

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.6
33.3
Major BPS
78.6
0.71
1
78.6
31
Major PPT
65.5
0.35
1
65.2
35
Minor 5ss
37.9
-1.4
3.3
56.5
47.6
Minor BPS
51.3
0.02
1.6
60.41
38.7

Associated Gene:

Gene:
GOLT1B
Ensembl Gene ID:
ENSAPLG00000003388
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003458
76245372 - 76255652
10281