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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_76250120_76251875_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76250120 - 76251875
Intron Length:
1756

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTATCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTCTTTATTT
Flanking Amino Acid:
FDKALLAIGNVLFVAGLAFV
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
1
78.2
36.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.2
0.79
0.7
78.1
36.1
Minor 5ss
38.7
-1.3
3.4
53.8
43.6
Minor BPS
76.2
0.9
1.4
91.47
32.2

Associated Gene:

Gene:
GOLT1B
Ensembl Gene ID:
ENSAPLG00000003388
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003458
76245372 - 76255652
10281