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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_76260078_76261384_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
76260078 - 76261384
Intron Length:
1307

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTGAAGA
5'SS Class:
major
3'SS Sequence:
TTTTTCTTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TTTTTCTTAACA
Flanking Amino Acid:
ETSAEAWNKRDFPWYEKIKT
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.2
65.5
40
Major BPS
78.6
0.71
1
78.6
31
Major PPT
87.9
0.85
0.8
85.2
28
Minor 5ss
35.3
-1.7
2.7
41.4
44.6
Minor BPS
91.6
1.3
0.7
95.02
20.5

Associated Gene:

Gene:
RECQL
Ensembl Gene ID:
ENSAPLG00000003404
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034135
76257735 - 76276613
18879
ENSAPLT00000023520
76257735 - 76276613
18879
ENSAPLT00000003516
76257735 - 76274702
16968