About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_76261565_76262250_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
76261565 - 76262250
Intron Length:
686

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTGTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
GATGCCACAAAT
Flanking Amino Acid:
CYQLPAVCSDGFTLVICPLI
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
77.7
31.7
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
85.5
0.8
0.9
80
37.5
Minor 5ss
41.3
-1
2.5
47.2
43.7
Minor BPS
46.2
-0.2
2
65.18
44.2

Associated Gene:

Gene:
RECQL
Ensembl Gene ID:
ENSAPLG00000003404
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023520
76257735 - 76276613
18879
ENSAPLT00000003516
76257735 - 76274702
16968
ENSAPLT00000034135
76257735 - 76276613
18879