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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_76262358_76263957_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76262358 - 76263957
Intron Length:
1600

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTGAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAT
U12 Branch Point Sequence:
TTGTTTTGAACA
Flanking Amino Acid:
ATLLNASSSKEHVKWVHTEM
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
85.8
25.5
Major BPS
66.4
0.41
1.1
56.9
40.5
Major PPT
75.6
0.58
1
73.3
40.9
Minor 5ss
49.9
-0
2.4
66.7
44.7
Minor BPS
67.7
0.55
1.4
75.45
36.1

Associated Gene:

Gene:
RECQL
Ensembl Gene ID:
ENSAPLG00000003404
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034135
76257735 - 76276613
18879
ENSAPLT00000023520
76257735 - 76276613
18879
ENSAPLT00000003516
76257735 - 76274702
16968