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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_76270242_76270803_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
76270242 - 76270803
Intron Length:
562

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
GTTTTGCACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAATCAT
U12 Branch Point Sequence:
TTGTTTTGCACA
Flanking Amino Acid:
RMCDNCCRENCILGNYTFFF
Intron Amino Acid Position:
483

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.1
76.6
33.9
Major BPS
68.1
0.45
1.1
69.7
35.6
Major PPT
71.7
0.49
1
65.5
40.2
Minor 5ss
38
-1.4
2.8
52.2
44.4
Minor BPS
49.8
-0
1.9
67.12
39.9

Associated Gene:

Gene:
RECQL
Ensembl Gene ID:
ENSAPLG00000003404
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023520
76257735 - 76276613
18879