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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_76270851_76271296_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76270851 - 76271296
Intron Length:
446

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGTGG
5'SS Class:
major
3'SS Sequence:
TCTTGTCCGTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTGAT
U12 Branch Point Sequence:
TAATCTGTATAG
Flanking Amino Acid:
TFFFLVYFLECFERRNALSV
Intron Amino Acid Position:
499

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
63.7
43.1
Major BPS
73.5
0.58
1.2
63.4
44.3
Major PPT
70.2
0.45
1
70.2
36.5
Minor 5ss
35.5
-1.6
3.3
46.8
48.5
Minor BPS
43.1
-0.6
2.2
50.49
43.5

Associated Gene:

Gene:
RECQL
Ensembl Gene ID:
ENSAPLG00000003404
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023520
76257735 - 76276613
18879