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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_76272076_76272856_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
76272076 - 76272856
Intron Length:
781

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTATGTATG
5'SS Class:
major
3'SS Sequence:
TTAATTTACGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ACTGATTTAATT
Flanking Amino Acid:
IAHLLLQQYLKEDFSFTAFA
Intron Amino Acid Position:
556

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
77.2
37.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
74
0.54
1
69.9
40.2
Minor 5ss
47.1
-0.3
2.5
59.8
38.9
Minor BPS
57.4
0.31
1.6
70.58
41.2

Associated Gene:

Gene:
RECQL
Ensembl Gene ID:
ENSAPLG00000003404
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034135
76257735 - 76276613
18879
ENSAPLT00000023520
76257735 - 76276613
18879
ENSAPLT00000003516
76257735 - 76274702
16968