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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_76278999_76279280_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76278999 - 76279280
Intron Length:
282

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATCAA
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATTATTT
Flanking Amino Acid:
SWEPSPVWHQMRLWTQARQM
Intron Amino Acid Position:
372

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
76.5
34.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
89
0.88
0.7
89.1
27.6
Minor 5ss
32.9
-2
3
40.7
45.5
Minor BPS
57.4
0.31
1.8
77.92
38.5

Associated Gene:

Gene:
PYROXD1
Ensembl Gene ID:
ENSAPLG00000003575
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040619
76277802 - 76293177
15376
ENSAPLT00000003672
76277802 - 76293177
15376