Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_76282129_76283163_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

76282129 - 76283163

Intron Length:

1035

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTATGGTCA

5'SS Class:

strong_major

3'SS Sequence:

AAACTTTCTTTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTACAT

U12 Branch Point Sequence:

TTATGTTTACAT

Flanking Amino Acid:

EGLNLKGTKEFSHKVHIEKL

Intron Amino Acid Position:

250

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.9

0.75

35.1

Major BPS

82.7

0.81

0.9

89.3

26.1

Major PPT

0.45

0.9

67.1

39.3

Minor 5ss

43.1

-0.8

56.5

47.9

Minor BPS

49.5

0.04

2.1

73.64

43.3

Associated Gene:

Gene:

PYROXD1

Ensembl Gene ID:

ENSAPLG00000003575

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040619

76277802 - 76293177

15376

ENSAPLT00000003672

76277802 - 76293177

15376