About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_76283265_76284423_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
76283265 - 76284423
Intron Length:
1159

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
ATATGCTAAATC
Flanking Amino Acid:
ECKRTKYTMEGSEKKERPVA
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.9
0.9
80.5
35
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
86.8
0.83
0.8
84.6
30.3
Minor 5ss
48
-0.2
2.5
67.3
43.8
Minor BPS
51.4
0.02
2.1
65.29
40.7

Associated Gene:

Gene:
PYROXD1
Ensembl Gene ID:
ENSAPLG00000003575
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040619
76277802 - 76293177
15376
ENSAPLT00000003672
76277802 - 76293177
15376