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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_76288658_76289758_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76288658 - 76289758
Intron Length:
1101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGAG
5'SS Class:
strong_major
3'SS Sequence:
CTTATTCCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATATTTTTAAAT
Flanking Amino Acid:
VIKAVTNFKQISKTLEEFDV
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
75.1
35.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
83
0.74
0.8
76.7
31.9
Minor 5ss
29.8
-2.3
3.3
37.5
47.2
Minor BPS
69.2
0.68
1.3
80.13
35.2

Associated Gene:

Gene:
PYROXD1
Ensembl Gene ID:
ENSAPLG00000003575
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003672
76277802 - 76293177
15376