Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_7629201_7639585_F

Intron Information:

Intron Rank:

131711

Intron Class:

major

Intron Phase:

Intron Coordinates:

7629201 - 7639585

Intron Length:

10385

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

AAG|GCAAGTGCT

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTAAT

U12 Branch Point Sequence:

TAATCAAGAAAT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

99.4

1.17

0.7

94.5

Major BPS

0.92

0.9

86.2

29.1

Major PPT

100

1.12

0.4

100

Minor 5ss

-2.9

41.3

45.2

Minor BPS

45.8

-0.2

67.61

41.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020704

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029193

7620848 - 7698265

77418