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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_76326424_76328939_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
76326424 - 76328939
Intron Length:
2516

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGATT
5'SS Class:
major
3'SS Sequence:
TCTTTTATATTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTTCTTTTATA
Flanking Amino Acid:
MPEQPAAKTKSSHHLEKRKC
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
77.1
37.5
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
78.2
0.63
0.9
79.2
32.7
Minor 5ss
44.4
-0.6
3.2
66.1
45.1
Minor BPS
72.9
0.71
1.5
82.82
31.5

Associated Gene:

Gene:
IAPP
Ensembl Gene ID:
ENSAPLG00000003888
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003993
76325948 - 76331749
5802