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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_76329075_76329215_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
76329075 - 76329215
Intron Length:
141

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTATTGTTTAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TATTGTTTAAAG
Flanking Amino Acid:
LSCLEATPIEKLLSVADDLS
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.77
0.9
80.3
26.9
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
74.1
0.54
1.1
74.7
39
Minor 5ss
32.3
-2
2.7
37
33.9
Minor BPS
57.5
0.1
1.9
65.66
42.1

Associated Gene:

Gene:
IAPP
Ensembl Gene ID:
ENSAPLG00000003888
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003993
76325948 - 76331749
5802