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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_76329313_76331641_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
76329313 - 76331641
Intron Length:
2329

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTCAAG
5'SS Class:
major
3'SS Sequence:
TTATTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
CAGTTTTGAATC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1.1
61.8
44.3
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
90.3
0.91
0.7
88.9
27.7
Minor 5ss
37.7
-1.4
3.1
48.5
47.3
Minor BPS
51.1
0.02
1.4
55.23
37.7

Associated Gene:

Gene:
IAPP
Ensembl Gene ID:
ENSAPLG00000003888
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003993
76325948 - 76331749
5802