Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_76344497_76348571_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

5UTR

Intron Coordinates:

76344497 - 76348571

Intron Length:

4075

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACT|GTAAGTATA

5'SS Class:

major

3'SS Sequence:

CAACACTGTAAAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTTCAA

U12 Branch Point Sequence:

TCTTTTTCAACA

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.8

0.65

1.1

80.4

Major BPS

90.8

1.01

0.7

91.9

19.6

Major PPT

49.9

-0

1.1

47.9

38.8

Minor 5ss

42.2

-0.9

2.9

61.3

Minor BPS

66.6

0.52

1.5

74.67

37.4

Associated Gene:

Gene:

SLCO1A2

Ensembl Gene ID:

ENSAPLG00000003909

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044103

76343869 - 76366955

23087

ENSAPLT00000004063

76343869 - 76366113

22245