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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_76348679_76349829_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76348679 - 76349829
Intron Length:
1151

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGAAA
5'SS Class:
major
3'SS Sequence:
CTTTCCTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
AATTCTTCACGT
Flanking Amino Acid:
DKFCGISRLKVFLLALSLAF
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
68.4
38.1
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
79.9
0.67
0.7
73.2
31.7
Minor 5ss
29.9
-2.3
3.3
39.1
46.3
Minor BPS
47.3
-0.1
2
67.52
43.4

Associated Gene:

Gene:
SLCO1A2
Ensembl Gene ID:
ENSAPLG00000003909
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004063
76343869 - 76366113
22245
ENSAPLT00000044103
76343869 - 76366955
23087
ENSAPLT00000033342
76346932 - 76366955
20024
ENSAPLT00000023348
76337515 - 76366955
29441