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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_76349597_76349829_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76349597 - 76349829
Intron Length:
233

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAGAAC
5'SS Class:
major
3'SS Sequence:
CTTTCCTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
AATTCTTCACGT
Flanking Amino Acid:
SEDNVGGWEQVFLLALSLAF
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
71.5
33.6
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
79.9
0.67
0.7
73.2
31.7
Minor 5ss
26.5
-2.7
3.1
33
42.4
Minor BPS
47.3
-0.1
2
67.52
43.4

Associated Gene:

Gene:
SLCO1A2
Ensembl Gene ID:
ENSAPLG00000003909
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024941
76349276 - 76366955
17680