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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_76349972_76351810_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
76349972 - 76351810
Intron Length:
1839

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAATCAAT
5'SS Class:
major
3'SS Sequence:
GTTCTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATGAT
U12 Branch Point Sequence:
TGGTTTGTAAAT
Flanking Amino Acid:
VGIINGSFEIGNLLLIAFVS
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1.1
72.5
38.4
Major BPS
75.8
0.64
1
65.8
41
Major PPT
89
0.88
0.7
84.2
30.7
Minor 5ss
41.3
-1
2.9
54.6
43.8
Minor BPS
48.8
-0
2.1
68.97
42.3

Associated Gene:

Gene:
SLCO1A2
Ensembl Gene ID:
ENSAPLG00000003909
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024941
76349276 - 76366955
17680
ENSAPLT00000023348
76337515 - 76366955
29441
ENSAPLT00000004063
76343869 - 76366113
22245
ENSAPLT00000044103
76343869 - 76366955
23087
ENSAPLT00000033342
76346932 - 76366955
20024