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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_76357618_76359691_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
76357618 - 76359691
Intron Length:
2074

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TATTTCATTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTACACTAACT
Flanking Amino Acid:
AKETMYEIAKDFIPFLKALF
Intron Amino Acid Position:
308

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.9
1.13
0.7
84
30.2
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
83.3
0.75
0.8
74.8
39.5
Minor 5ss
31.5
-2.1
4
48.7
47.5
Minor BPS
57.9
0.32
2
81.91
38.5

Associated Gene:

Gene:
SLCO1A2
Ensembl Gene ID:
ENSAPLG00000003909
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024941
76349276 - 76366955
17680
ENSAPLT00000023348
76337515 - 76366955
29441
ENSAPLT00000004063
76343869 - 76366113
22245
ENSAPLT00000044103
76343869 - 76366955
23087
ENSAPLT00000033342
76346932 - 76366955
20024