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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_76363229_76363827_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76363229 - 76363827
Intron Length:
599

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAAGCAT
5'SS Class:
major
3'SS Sequence:
CTTTTTTTGGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TGTGATTAAAAT
Flanking Amino Acid:
KASRGTGKSVVFENCTCVAA
Intron Amino Acid Position:
484

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1
64.6
40.9
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
85.5
0.8
0.9
84
31
Minor 5ss
31.9
-2.1
3.5
43.7
45.1
Minor BPS
46.5
-0.1
2
66.63
43.9

Associated Gene:

Gene:
SLCO1A2
Ensembl Gene ID:
ENSAPLG00000003909
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033342
76346932 - 76366955
20024
ENSAPLT00000024941
76349276 - 76366955
17680
ENSAPLT00000023348
76337515 - 76366955
29441
ENSAPLT00000004063
76343869 - 76366113
22245
ENSAPLT00000044103
76343869 - 76366955
23087