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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_76364013_76364559_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
76364013 - 76364559
Intron Length:
547

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGTAA
5'SS Class:
major
3'SS Sequence:
ATGTACCATATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
CCTCTGTTAATC
Flanking Amino Acid:
AAMPGYMVLIRSLKPEEKSF
Intron Amino Acid Position:
545

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
65.4
36.8
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
62.9
0.29
1
55.8
39.6
Minor 5ss
34.3
-1.8
3.5
46.3
49
Minor BPS
48.7
-0.1
2.1
58.43
41.4

Associated Gene:

Gene:
SLCO1A2
Ensembl Gene ID:
ENSAPLG00000003909
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024941
76349276 - 76366955
17680
ENSAPLT00000023348
76337515 - 76366955
29441
ENSAPLT00000004063
76343869 - 76366113
22245
ENSAPLT00000044103
76343869 - 76366955
23087
ENSAPLT00000033342
76346932 - 76366955
20024