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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_76364625_76365202_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
76364625 - 76365202
Intron Length:
578

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
AAATCTCTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTTTATTAAAA
Flanking Amino Acid:
GIHELASRVFAGIPSPIYFG
Intron Amino Acid Position:
567

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
78.7
29.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
70.7
0.47
0.9
67.3
39.1
Minor 5ss
32.9
-1.9
2.9
37.3
41.2
Minor BPS
64.5
0.45
1.7
76.25
33.9

Associated Gene:

Gene:
SLCO1A2
Ensembl Gene ID:
ENSAPLG00000003909
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024941
76349276 - 76366955
17680
ENSAPLT00000023348
76337515 - 76366955
29441
ENSAPLT00000004063
76343869 - 76366113
22245
ENSAPLT00000044103
76343869 - 76366955
23087
ENSAPLT00000033342
76346932 - 76366955
20024