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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_76365321_76365958_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
76365321 - 76365958
Intron Length:
638

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATTTT
5'SS Class:
strong_major
3'SS Sequence:
ATCTTTCTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
GGCTGTCTATCT
Flanking Amino Acid:
ACRMYDIVTYRQQSIREPGS
Intron Amino Acid Position:
606

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
0.9
82.9
29.9
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
76.8
0.6
0.8
69.9
36
Minor 5ss
55.6
0.19
2.5
75.5
40.6
Minor BPS
41.8
-0.5
2.2
57.72
45.1

Associated Gene:

Gene:
SLCO1A2
Ensembl Gene ID:
ENSAPLG00000003909
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004063
76343869 - 76366113
22245