Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_76376286_76379961_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

76376286 - 76379961

Intron Length:

3676

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGTATC

5'SS Class:

strong_major

3'SS Sequence:

ATTTTTTTTCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTAAGAT

U12 Branch Point Sequence:

ATGACAGTAACA

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.3

0.9

0.8

88.1

25.2

Major BPS

67.4

0.43

1.1

63.4

42.8

Major PPT

92.1

0.95

0.7

85.1

34.9

Minor 5ss

-0.9

2.8

55.1

35.9

Minor BPS

47.6

-0.1

2.3

63.87

42.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000004396

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004541

76376117 - 76398625

22509