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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_76378660_76379961_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
76378660 - 76379961
Intron Length:
1302

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTTCT
5'SS Class:
major
3'SS Sequence:
ATTTTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAAGAT
U12 Branch Point Sequence:
ATGACAGTAACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
75.5
35
Major BPS
67.4
0.43
1.1
63.4
42.8
Major PPT
92.1
0.95
0.7
85.1
34.9
Minor 5ss
45
-0.5
2.8
65.4
39.4
Minor BPS
47.6
-0.1
2.3
63.87
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004396
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043222
76377937 - 76398934
20998