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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_763805_764189_F

Intron Information:

Intron Rank:
135748
Intron Class:
major
Intron Phase:
Intron Coordinates:
763805 - 764189
Intron Length:
385

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTTCAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
ATTTTCTGATCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
93.7
19.9
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
80.7
0.69
1
79.6
32.8
Minor 5ss
39.4
-1.2
3.1
57.6
46.6
Minor BPS
60.9
0.34
1.7
74.43
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023086
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026164
763664 - 765673
2010