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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_76382699_76382944_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
76382699 - 76382944
Intron Length:
246

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TTATGACCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATGACCT
Flanking Amino Acid:
TETPNTMKNSGCEKTSNSYL
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
83.2
30.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
74.5
0.55
0.9
67.3
39.1
Minor 5ss
38.7
-1.3
2.8
48.1
47.6
Minor BPS
49.7
0.06
2
75.1
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004396
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043222
76377937 - 76398934
20998
ENSAPLT00000004541
76376117 - 76398625
22509