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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_76385530_76386309_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
76385530 - 76386309
Intron Length:
780

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGAGTC
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTTTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TGATATCTAATC
Flanking Amino Acid:
LWVDIGIADIDAISINPKDT
Intron Amino Acid Position:
255

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
1
73.7
35.7
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
81.9
0.72
0.8
76.5
37.7
Minor 5ss
35.5
-1.6
3.5
51.6
45.1
Minor BPS
49.3
-0
1.8
61.87
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004396
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043222
76377937 - 76398934
20998
ENSAPLT00000004541
76376117 - 76398625
22509