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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_76391903_76394641_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76391903 - 76394641
Intron Length:
2739

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAATATA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTCTGATTAAAT
Flanking Amino Acid:
KSSTGTGKNMVFHNCSCVEA
Intron Amino Acid Position:
509

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
82.2
30.3
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
87.3
0.84
0.7
84.7
23
Minor 5ss
38.8
-1.3
2.9
47.7
43.2
Minor BPS
54.6
0.22
2.1
78.39
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004396
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043222
76377937 - 76398934
20998
ENSAPLT00000004541
76376117 - 76398625
22509