Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_7639678_7697625_F

Intron Information:

Intron Rank:

131712

Intron Class:

major

Intron Phase:

Intron Coordinates:

7639678 - 7697625

Intron Length:

57948

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGATGT

5'SS Class:

strong_major

3'SS Sequence:

TCTGTTTCTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AGCTAAT

U12 Branch Point Sequence:

GCTTGTTTCACG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.6

0.98

0.8

81.6

33.2

Major BPS

70.5

0.51

1.1

69.7

35.5

Major PPT

84.8

0.78

0.8

37.3

Minor 5ss

39.7

-1.2

3.1

56.6

47.5

Minor BPS

47.2

-0.3

2.2

55.14

46.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020704

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029193

7620848 - 7698265

77418