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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_76397650_76398402_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
76397650 - 76398402
Intron Length:
753

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTTTTTTTTAAG
Flanking Amino Acid:
SCRVYDTKAFRNVYLGLIAG
Intron Amino Acid Position:
629

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
81
28.7
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
88.4
0.86
0.9
94.6
18.5
Minor 5ss
36
-1.6
3.3
46.2
49.1
Minor BPS
56.3
0.05
1.8
67.7
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004396
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043222
76377937 - 76398934
20998
ENSAPLT00000004541
76376117 - 76398625
22509