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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_76407681_76410672_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
76407681 - 76410672
Intron Length:
2992

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCTGTT
5'SS Class:
major
3'SS Sequence:
TTTTCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
AACTTCTAAACC
Flanking Amino Acid:
IRRDGLISSTDYFTTSNGSK
Intron Amino Acid Position:
663

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.2
76.2
39.9
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
94.1
0.99
0.5
92.8
16.8
Minor 5ss
42.8
-0.8
3.6
66.4
45.1
Minor BPS
59.4
0.27
1.7
65.22
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004518
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038690
76407607 - 76434727
27121