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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_76414483_76416285_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
76414483 - 76416285
Intron Length:
1803

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTATTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
GATATCTTGAGA
Flanking Amino Acid:
LGPTYTAEFIAGIPAPVYFG
Intron Amino Acid Position:
606

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
70.6
41.3
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
90.1
0.9
0.7
85.6
27.2
Minor 5ss
33.7
-1.9
2.9
38.1
40.9
Minor BPS
51.1
0.03
1.7
60.3
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004518
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038690
76407607 - 76434727
27121
ENSAPLT00000035362
76412528 - 76434727
22200
ENSAPLT00000026316
76410239 - 76434727
24489