About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_76416494_76417309_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
76416494 - 76417309
Intron Length:
816

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
ATCTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TCCTTCTTATCC
Flanking Amino Acid:
GGTPAYMIMFRCVQPELKAL
Intron Amino Acid Position:
575

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.9
1.13
0.6
92.3
16.1
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
87.2
0.84
0.7
85.1
29
Minor 5ss
35
-1.7
2.7
41.8
44.8
Minor BPS
63.5
0.4
1.6
69.18
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004518
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035362
76412528 - 76434727
22200
ENSAPLT00000026316
76410239 - 76434727
24489
ENSAPLT00000004705
76407607 - 76434727
27121
ENSAPLT00000047858
76412528 - 76434727
22200
ENSAPLT00000038690
76407607 - 76434727
27121