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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_76417495_76418528_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76417495 - 76418528
Intron Length:
1034

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACAAAAT
U12 Branch Point Sequence:
TGTCCCACAAAA
Flanking Amino Acid:
TTSVGHGKSMVFHNCSCLKA
Intron Amino Acid Position:
514

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
68.7
34.5
Major BPS
49.7
-0
1.1
55.6
36
Major PPT
82.1
0.72
0.9
73.5
41.8
Minor 5ss
31.8
-2.1
3.3
40.1
39.9
Minor BPS
48.4
-0.1
1.9
65.18
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004518
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038690
76407607 - 76434727
27121
ENSAPLT00000035362
76412528 - 76434727
22200
ENSAPLT00000026316
76410239 - 76434727
24489
ENSAPLT00000004705
76407607 - 76434727
27121
ENSAPLT00000047858
76412528 - 76434727
22200