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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_76420879_76422380_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
76420879 - 76422380
Intron Length:
1502

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
CCCTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TATATTTCAAAG
Flanking Amino Acid:
KPMKWSTMMKDFYTSLKKIL
Intron Amino Acid Position:
339

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.7
1.17
0.7
98.4
4.81
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
85.7
0.8
0.7
83.6
24.7
Minor 5ss
28.3
-2.5
4.2
48.7
47.5
Minor BPS
48.1
-0.2
1.7
54.63
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004518
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035362
76412528 - 76434727
22200
ENSAPLT00000026316
76410239 - 76434727
24489
ENSAPLT00000004705
76407607 - 76434727
27121
ENSAPLT00000047858
76412528 - 76434727
22200
ENSAPLT00000038690
76407607 - 76434727
27121