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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_76423833_76424621_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
76423833 - 76424621
Intron Length:
789

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAAC
5'SS Class:
strong_major
3'SS Sequence:
TCATTATCTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAA
U12 Branch Point Sequence:
CTCTCATTATCT
Flanking Amino Acid:
NKTLLETSKSDCEKEPSSYM
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
82.1
31
Major BPS
75.5
0.63
1
66
40.9
Major PPT
79.6
0.67
0.9
73.3
36
Minor 5ss
32.6
-2
3.1
42.1
45
Minor BPS
58.5
0.34
1.9
76.82
45.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004518
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038690
76407607 - 76434727
27121
ENSAPLT00000035362
76412528 - 76434727
22200
ENSAPLT00000026316
76410239 - 76434727
24489
ENSAPLT00000004705
76407607 - 76434727
27121
ENSAPLT00000047858
76412528 - 76434727
22200