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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_76424738_76426882_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
76424738 - 76426882
Intron Length:
2145

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TGTGTGTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTGCTTCTAAAT
Flanking Amino Acid:
LTAMPHFFMGYYKYETASHT
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
79.9
32.8
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
80.5
0.69
0.9
76.9
42.1
Minor 5ss
40.2
-1.1
2.8
54.6
37.1
Minor BPS
49.8
0.06
1.7
70.92
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004518
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038690
76407607 - 76434727
27121
ENSAPLT00000035362
76412528 - 76434727
22200
ENSAPLT00000026316
76410239 - 76434727
24489
ENSAPLT00000004705
76407607 - 76434727
27121
ENSAPLT00000047858
76412528 - 76434727
22200