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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_76558054_76565846_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
76558054 - 76565846
Intron Length:
7793

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTAAC
5'SS Class:
major
3'SS Sequence:
TTTTCTTCAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAAAAT
U12 Branch Point Sequence:
TTTTCTTCAACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.52
1.1
70.8
34.7
Major BPS
54
0.1
1
59.7
32.6
Major PPT
84.5
0.78
0.8
81.6
28.9
Minor 5ss
33.5
-1.9
2.8
46.6
41.8
Minor BPS
78.6
0.89
1.4
87.68
29.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002594
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002659
76557892 - 76580780
22889