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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_76578155_76578429_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76578155 - 76578429
Intron Length:
275

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTTG
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTCTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
AAATATTTATTT
Flanking Amino Acid:
LSQKIEFECKIFPLISQSRR
Intron Amino Acid Position:
1305

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
38.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
81.8
0.71
0.8
77.2
31.6
Minor 5ss
42
-0.9
3
55
49.2
Minor BPS
49.6
0.05
1.7
65.44
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002594
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018325
76552175 - 76580780
28606
ENSAPLT00000002659
76557892 - 76580780
22889