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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_76627329_76627909_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76627329 - 76627909
Intron Length:
581

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TTTTCTATTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
GATTATTTAACC
Flanking Amino Acid:
RETLKAFHFALNCCGIAGSL
Intron Amino Acid Position:
190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
74
36.3
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
86
0.81
0.7
82.2
28
Minor 5ss
38.9
-1.2
2.7
53.8
42.8
Minor BPS
68.7
0.57
1.5
73.62
36.5

Associated Gene:

Gene:
CD9
Ensembl Gene ID:
ENSAPLG00000002647
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046017
76624011 - 76645061
21051
ENSAPLT00000002826
76624011 - 76645061
21051