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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_76630803_76633708_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
76630803 - 76633708
Intron Length:
2906

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
GCTTTTATACCC
Flanking Amino Acid:
LESNNTTFYTGVYILIGAGA
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
79.5
36.8
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
85
0.79
0.7
77.9
30.9
Minor 5ss
38.5
-1.3
3.4
55.9
48.3
Minor BPS
47.5
-0.2
1.8
58.92
40.5

Associated Gene:

Gene:
CD9
Ensembl Gene ID:
ENSAPLG00000002647
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002826
76624011 - 76645061
21051