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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_76633812_76643735_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76633812 - 76643735
Intron Length:
9924

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGGAG
5'SS Class:
major
3'SS Sequence:
TTTGTTCTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TATTATTTAACA
Flanking Amino Acid:
LLFGFNFIFWLAGTAVLAIG
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
63.9
42.4
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
89.6
0.89
0.7
84.2
30.9
Minor 5ss
28.1
-2.5
3.4
29
43.5
Minor BPS
75.1
0.78
1.4
81.72
32.8

Associated Gene:

Gene:
CD9
Ensembl Gene ID:
ENSAPLG00000002647
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002826
76624011 - 76645061
21051