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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_76709312_76710689_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76709312 - 76710689
Intron Length:
1378

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACAGCA
5'SS Class:
major
3'SS Sequence:
CACTTCTCTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
ACATTTTCACTT
Flanking Amino Acid:
SFSVIIETVQCADDPDAVCT
Intron Amino Acid Position:
430

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1.1
68.7
36.4
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
74.9
0.56
0.8
69.7
30.7
Minor 5ss
36.3
-1.6
3.3
48.6
47.1
Minor BPS
45.9
-0.2
1.7
58.23
39.7

Associated Gene:

Gene:
VWF
Ensembl Gene ID:
ENSAPLG00000002805
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002949
76675951 - 76824887
148937
ENSAPLT00000045676
76675951 - 76824914
148964